Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

Download FIRM

Citation

Genes Targeted by hsa-mir-548c-3p in AD Lung Beer Cluster 6 Table contains all genes in the AD Lung Beer cluster number 6. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-548c-3p 5922 RASA2 RAS p21 protein activator 2 [Source:HGNC Symbol;Acc:9872] zzz999 7029 TFDP2 transcription factor Dp-2 (E2F dimerization partner 2) [Source:HGNC Symbol;Acc:11751] zzz999 8672 EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 [Source:HGNC Symbol;Acc:3298] T 599 BCL2L2 BCL2-like 2 [Source:HGNC Symbol;Acc:995] T 3301 DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] zzz999 3150 HMGN1 high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:4984] T 7862 BRPF1 bromodomain and PHD finger containing, 1 [Source:HGNC Symbol;Acc:14255] zzz999 7716 VEZF1 vascular endothelial zinc finger 1 [Source:HGNC Symbol;Acc:12949] T 5692 PSMB4 proteasome (prosome, macropain) subunit, beta type, 4 [Source:HGNC Symbol;Acc:9541] zzz999 5711 PSMD5 proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 [Source:HGNC Symbol;Acc:9563] T 3858 KRT10 keratin 10 [Source:HGNC Symbol;Acc:6413] zzz999 29893 PSMC3IP PSMC3 interacting protein [Source:HGNC Symbol;Acc:17928] zzz999 8975 USP13 ubiquitin specific peptidase 13 (isopeptidase T-3) [Source:HGNC Symbol;Acc:12611] zzz999 7705 ZNF146 zinc finger protein 146 [Source:HGNC Symbol;Acc:12931] T 7485 WRB tryptophan rich basic protein [Source:HGNC Symbol;Acc:12790] T 7486 WRN Werner syndrome, RecQ helicase-like [Source:HGNC Symbol;Acc:12791] zzz999 5928 RBBP4 retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887] zzz999 90411 MCFD2 multiple coagulation factor deficiency 2 [Source:HGNC Symbol;Acc:18451] zzz999 7637 ZNF84 Zinc finger protein 84 [Source:UniProtKB/Swiss-Prot;Acc:P51523] T 10921 RNPS1 RNA binding protein S1, serine-rich domain [Source:HGNC Symbol;Acc:10080] zzz999 7514 XPO1 exportin 1 (CRM1 homolog, yeast) [Source:HGNC Symbol;Acc:12825] T 9295 SRSF11 serine/arginine-rich splicing factor 11 [Source:HGNC Symbol;Acc:10782] zzz999 4089 SMAD4 SMAD family member 4 [Source:HGNC Symbol;Acc:6770] T 4291 MLF1 myeloid leukemia factor 1 [Source:HGNC Symbol;Acc:7125] zzz999 7175 TPR translocated promoter region (to activated MET oncogene) [Source:HGNC Symbol;Acc:12017] T 6787 NEK4 NIMA (never in mitosis gene a)-related kinase 4 [Source:HGNC Symbol;Acc:11399] T 6782 HSPA13 heat shock protein 70kDa family, member 13 [Source:HGNC Symbol;Acc:11375] T 8883 NAE1 NEDD8 activating enzyme E1 subunit 1 [Source:HGNC Symbol;Acc:621] zzz999 22872 SEC31A SEC31 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:17052] zzz999 30849 PIK3R4 phosphoinositide-3-kinase, regulatory subunit 4 [Source:HGNC Symbol;Acc:8982] T 6894 TARBP1 TAR (HIV-1) RNA binding protein 1 [Source:HGNC Symbol;Acc:11568] T 27109 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B) [Source:HGNC Symbol;Acc:18799] zzz999 2332 FMR1 fragile X mental retardation 1 [Source:HGNC Symbol;Acc:3775] T 10479 SLC9A6 solute carrier family 9 (sodium/hydrogen exchanger), member 6 [Source:HGNC Symbol;Acc:11079] T 34 ACADM acyl-CoA dehydrogenase, C-4 to C-12 straight chain [Source:HGNC Symbol;Acc:89] T 1054 CEBPG CCAAT/enhancer binding protein (C/EBP), gamma [Source:HGNC Symbol;Acc:1837] zzz999 11011 TLK2 tousled-like kinase 2 [Source:HGNC Symbol;Acc:11842] T 9276 COPB2 coatomer protein complex, subunit beta 2 (beta prime) [Source:HGNC Symbol;Acc:2232] T 6259 RYK RYK receptor-like tyrosine kinase [Source:HGNC Symbol;Acc:10481] T 1896 EDA ectodysplasin A [Source:HGNC Symbol;Acc:3157] T 27336 HTATSF1 HIV-1 Tat specific factor 1 [Source:HGNC Symbol;Acc:5276] T 6152 RPL24 ribosomal protein L24 [Source:HGNC Symbol;Acc:10325] T 1376 CPT2 carnitine palmitoyltransferase 2 [Source:HGNC Symbol;Acc:2330] zzz999 6118 RPA2 replication protein A2, 32kDa [Source:HGNC Symbol;Acc:10290] zzz999 178 AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase [Source:HGNC Symbol;Acc:321] T 3920 LAMP2 lysosomal-associated membrane protein 2 [Source:HGNC Symbol;Acc:6501] T 6738 TROVE2 TROVE domain family, member 2 [Source:HGNC Symbol;Acc:11313] T 84220 RGPD6 RANBP2-like and GRIP domain containing 6 [Source:HGNC Symbol;Acc:32419] T 1387 CREBBP CREB binding protein [Source:HGNC Symbol;Acc:2348] P T 8480 RAE1 RAE1 RNA export 1 homolog (S. pombe) [Source:HGNC Symbol;Acc:9828] zzz999 11073 TOPBP1 topoisomerase (DNA) II binding protein 1 [Source:HGNC Symbol;Acc:17008] P T 5601 MAPK9 mitogen-activated protein kinase 9 [Source:HGNC Symbol;Acc:6886] zzz999 7072 TIA1 TIA1 cytotoxic granule-associated RNA binding protein [Source:HGNC Symbol;Acc:11802] P T 10152 ABI2 abl-interactor 2 [Source:HGNC Symbol;Acc:24011] T 7818 DAP3 death associated protein 3 [Source:HGNC Symbol;Acc:2673] zzz999 6311 ATXN2 ataxin 2 [Source:HGNC Symbol;Acc:10555] zzz999 2071 ERCC3 excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing) [Source:HGNC Symbol;Acc:3435] zzz999 3151 HMGN2 high mobility group nucleosomal binding domain 2 [Source:HGNC Symbol;Acc:4986] P T 10668 CGRRF1 cell growth regulator with ring finger domain 1 [Source:HGNC Symbol;Acc:15528] zzz999 9326 ZNHIT3 zinc finger, HIT-type containing 3 [Source:HGNC Symbol;Acc:12309] zzz999 1371 CPOX coproporphyrinogen oxidase [Source:HGNC Symbol;Acc:2321] T 10657 KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 [Source:HGNC Symbol;Acc:18116] T 10947 AP3M2 adaptor-related protein complex 3, mu 2 subunit [Source:HGNC Symbol;Acc:570] T 9657 IQCB1 IQ motif containing B1 [Source:HGNC Symbol;Acc:28949] zzz999 836 CASP3 caspase 3, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:1504] T 7307 U2AF1 U2 small nuclear RNA auxiliary factor 1 [Source:HGNC Symbol;Acc:12453] T 5431 POLR2B polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Source:HGNC Symbol;Acc:9188] zzz999 6646 SOAT1 sterol O-acyltransferase 1 [Source:HGNC Symbol;Acc:11177] P T 4801 NFYB nuclear transcription factor Y, beta [Source:HGNC Symbol;Acc:7805] P T 5378 PMS1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:9121] zzz999 6879 TAF7 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa [Source:HGNC Symbol;Acc:11541] zzz999 5634 PRPS2 phosphoribosyl pyrophosphate synthetase 2 [Source:HGNC Symbol;Acc:9465] T 9794 MAML1 mastermind-like 1 (Drosophila) [Source:HGNC Symbol;Acc:13632] T 10951 CBX1 chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] T 8971 H1FX H1 histone family, member X [Source:HGNC Symbol;Acc:4722] zzz999 11222 MRPL3 mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:10379] T 1207 CLNS1A chloride channel, nucleotide-sensitive, 1A [Source:HGNC Symbol;Acc:2080] zzz999 2734 GLG1 golgi glycoprotein 1 [Source:HGNC Symbol;Acc:4316] zzz999 6596 HLTF helicase-like transcription factor [Source:HGNC Symbol;Acc:11099] T 6874 TAF4 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa [Source:HGNC Symbol;Acc:11537] P T 10928 RALBP1 ralA binding protein 1 [Source:HGNC Symbol;Acc:9841] P T 3183 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:HGNC Symbol;Acc:5035] T 9931 HELZ helicase with zinc finger [Source:HGNC Symbol;Acc:16878] T 6434 TRA2B transformer 2 beta homolog (Drosophila) [Source:HGNC Symbol;Acc:10781] P T 2956 MSH6 mutS homolog 6 (E. coli) [Source:HGNC Symbol;Acc:7329] zzz999 55183 RIF1 RAP1 interacting factor homolog (yeast) [Source:HGNC Symbol;Acc:23207] T

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.